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Human Microbiota - Xenobiotics Interactions Lab
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Publications
Number of articles found:
27
P. Müller, J. de la Cuesta-Zuluaga, M. Kuhn, M. Baghai Arassi, T. Treis, S. Blasche, M. Zimmermann, P. Bork, K. R. Patil, A. Typas, S. Garcia-Santamarina#, L. Maier# (2023) High-throughput anaerobic screening for identifying compounds acting against gut bacteria in monocultures or communities. Nature Protocols, 1-32. #co-corresponding
S. Wuyts, R. Alves, M. Zimmermann-Kogadeeva, S. Nishijima, S. Blasche, Marja Driessen, P. E. Geyer, R. Hercog, E. Kartal, L. Maier, J. B. Müller, S. Garcia-Santamarina, T. S. B. Schmidt, D. C. Sevin, A. Telzerow, P. V. Treit, T. Wenzel, A. Typas, K. R. Patil, M. Mann, M. Kuhn, P. Bork (2023) Consistency across multi-omics layers in a drug-perturbed gut microbial community. Molecular Systems Biology, e11525
S. Garcia-Santamarina*, M. Kuhn*, S. Devendran, L. Maier, M. Driessen, A. Mateus, E. Mastrorilli, A. R. Brochado, M. M. Savitski, K. R. Patil, M. Zimmermann, P. Bork, A. Typas (2023) Emergence of community behaviors in the gut microbiota upon drug treatment. BioRxiv. *co-first authors
J. Bobonis, K. Mitosch, A. Mateus, N. Karcher, G. Kritikos, J. Selkrig, M. Zietek, V. Monzon, B.Pfalz, S. Garcia-Santamarina, M. Galardini, A. Sueki, C. Kobayashi, F.Stein, A. Bateman, G. Zeller, M. M. Savitski, J. R. Elfenbein, H. L. Andrews-Polymenis, A. Typas (2022) Bacterial retrons encode phage-defending tripartite toxin–antitoxin systems. Nature, 609, 144–150
C. Probst, S. Garcia-Santamarina, J. T. Brooks, I. Van Der Kloet, O. Baars, M. Ralle, D. J. Thiele, J. A. Alspaugh (2022) Interactions between copper homeostasis and the fungal cell wall affect copper stress resistance. PLoS Pathogens, 18(6): e1010195.
J. Bobonis, A. Mateus, B. Pfalz, S. Garcia-Santamarina, M. Galardini, C. Kobayashi, F. Stein, M. M. Savitski, J. R. Elfenbein, H. Andrews-Polymenis, A. Typas (2022) Bacterial retrons encode tripartite toxin/antitoxin systems. Nature, 609, 144–150.
C. Probst, S. Garcia-Santamarina, J. T. Brooks, I. Van Der Kloet, D. J. Thiele, J. A. Alspaugh (2021) Adaptive changes in the fungal cell wall mediate copper homeostasis. BioRxiv
L. Maier, C. V. Goemans, J. Wirbel, M. Kuhn, C. Eberl, M. Pruteanu, P. Müller, S. Garcia-Santamarina, E. Cacace, B. Zhang, C. Gekeler, T. Banerjee, E. E. Anderson, A. Milanese, U. Löber, S. K. Forslund, K. R. Patil, M. Zimmermann, B. Stecher, G. Zeller, P. Bork, A. Typas (2021) Unravelling the collateral damage of antibiotics on gut bacteria. Nature, 599, 120–124
A.D. Smith, S. Garcia-Santamarina, M. Ralle, D. R. Loiselle, T. A. Haystead, D. J. Thiele (2021) Transcription factor–driven alternative localization of Cryptococcus neoformans superoxide dismutase. Journal of Biological Chemistry, 296:100391
S. Boronat, L. Marte, M. Vega, S. García-Santamarina, M. Cabrera, J. Ayté, E. Hidalgo (2020) The Hsp40 Mas5 Connects Protein Quality Control and the General Stress Response through the Thermo-sensitive Pyp1. iScience, 23(11):101725
S. Garcia-Santamarina, C. Probst, R. A. Festa, C. Ding, A. D. Smith, S. E. Conklin, S. Brander, L. N Kinch, N. V Grishin, K. J. Franz, P. Riggs-Gelasco, L. L. Leggio, K. S. Johansen, D. J. Thiele (2020) A lytic polysaccharide monooxygenase-like protein functions in fungal copper import and meningitis. Nature Chemical Biology, 16, 337–344
L. Marte, S. Boronat, S. García-Santamarina, J. Ayté, K. Kitamura, E. Hidalgo (2020) Identification of ubiquitin-proteasome system components affecting the degradation of the transcription factor Pap1. Redox Biology, 28, 101305.
S. Garcia‐Santamarina*, R. A. Festa*, A. D. Smith*, C. Yu*, C. Probst, C. Ding, C. M. Homer, J. Yin, J. P. Noonan, H. Madhani, J. R. Perfect, D. J. Thiele (2018) Genome‐wide analysis of the regulation of Cu metabolism in Cryptococcus neoformans. Molecular Microbiology, 108: 473-494. *co-first authors
S. Garcia-Santamarina*, M. A. Uzarska*, R. A. Festa, R. Lill, D. J. Thiele (2017) Cryptococcus neoformans Iron-Sulfur Protein Biogenesis Machinery Is a Novel Layer of Protection against Cu Stress. mBio, 8:e01742-17. *co-first authors
S. Boronat, A. Domenech, M. Carmona, S. Garcia-Santamarina, M. C. Bano, J. Ayte, E. Hidalgo (2017) Lack of a peroxiredoxin suppresses the lethality of cells devoid of electron donors by channelling electrons to oxidized ribonucleotide reductase. PLoS Genetics, 13(6): e1006858
S. García-Santamarina, D. J. Thiele (2015) Copper at the fungal pathogen-host axis. Journal of Biological Chemistry, 290, 31, 18945-18953
S. Boronat, S. García-Santamarina, E. Hidalgo (2015) Gel-free proteomic methodologies to study reversible cysteine oxidation and irreversible protein carbonyl formation. Free Radical Research, 49:5, 494-510
S. García-Santamarina*, S. Boronat*, A. Domènech, J. Ayté, H, Molina, E, Hidalgo (2014) Monitoring in vivo reversible cysteine oxidation in proteins using ICAT and mass spectrometry. Nature Protocols, 9, 1131–1145. *co-first authors
S. García-Santamarina*, S. Boronat*, E. Hidalgo (2014) Reversible cysteine oxidation in hydrogen peroxide sensing and signal transduction. Biochemistry, 53, 16, 2560–2580. *co-first authors
E. Paulo*, S. García‐Santamarina*, I. A. Calvo*, M. Carmona, S. Boronat, A. Domènech, J. Ayté, E. Hidalgo (2014) A genetic approach to study H2O2 scavenging in fission yeast – distinct roles of peroxiredoxin and catalase. Molecular Microbiology, 92: 246-257. *co-first authors
S. Boronat, A. Domènech, E. Paulo, I. A. Calvo, S. García-Santamarina, P. García, J. Encinar del Dedo, A. Barcons, E. Serrano, M. Carmona, E. Hidalgo (2014) Thiol-based H2O2 signalling in microbial systems. Redox Biology, 2, 395-399
I. A. Calvo, S. Boronat, A. Domenech, S. García-Santamarina, J. Ayte, E. Hidalgo (2013) Dissection of a redox relay: H2O2-dependent activation of the transcription factor Pap1 through the peroxidatic Tpx1-thioredoxin cycle. Cell Reports, 5, 1413–1424
S. García‐Santamarina, S. Boronat, J. Ayté, E. Hidalgo (2013) Methionine sulphoxide reductases revisited: free methionine as a primary target of H2O2 stress in auxotrophic fission yeast. Molecular Microbiology, 90(5), 1113–1124
S. García-Santamarina*, S. Boronat*, I.A. Calvo, M. Rodríguez-Gabriel, J. Ayté, H. Molina, E. Hidalgo (2013) Is oxidized thioredoxin a major trigger for cysteine oxidation? Clues from a redox proteomics approach. Antioxidants & Redox Signaling, 18:13, 1549-1556. *co-first authors
S. García-Santamarina*, S. Boronat*, G. Espadas, J. Ayté, H. Molina, E. Hidalgo (2011) The oxidized thiol proteome in fission yeast—optimization of an ICAT-based method to identify H2O2-oxidized proteins. Journal of Proteomics, 74, 11. *co-first authors
I. A. Calvo, N. Gabrielli, I. Iglesias-Baena, S. García-Santamarina, K. Hoe, D. U. Kim, M. Sansó, A. Zuin, P. Pérez, J. Ayté, E. Hidalgo (2009) Genome-wide screen of genes required for caffeine tolerance in fission yeast. PLoS ONE, 4(8): e6619
A. Zuin, N. Gabrielli, I. A Calvo, S. García-Santamarina, K. Hoe, D. U. Kim, H. Park, J. Hayles, J. Ayté, E. Hidalgo (2008) Mitochondrial dysfunction increases oxidative stress and decreases chronological life span in fission yeast. PLoS ONE, 3(7): e2842.
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